PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g050940.1.1 | ||||||||
Common Name | LOC101268727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19623.3 Da PI: 7.7667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.3 | 9.6e-09 | 19 | 63 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ +fskRr g++K A+ L d+++ +i+f++tgk y + Solyc10g050940.1.1 19 NEKALLSSFSKRRDGLFKVANNLVKEFDVDIGIIVFAPTGKPYSF 63 55555679*********************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-13 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.199 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-17 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-14 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MENKKAKGRQ KIPMKKMKNE KALLSSFSKR RDGLFKVANN LVKEFDVDIG IIVFAPTGKP 60 YSFFHPTADA VISRFQNPDT QLSDETHLAM VFAQNSVNQL EKKLEELDIK EKIESDRTNY 120 LDQMTETRQK GWWESIEQLN EDEVSKFEAW LNVASFTMHY RLNQSIVSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g050940.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248900.1 | 1e-123 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7JBP7 | 1e-111 | A0A3Q7JBP7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g050940.1.1 | 1e-123 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-21 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g050940.1.1 |
Entrez Gene | 101268727 |
Publications ? help Back to Top | |||
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