PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g050900.1.1
Common NameLOC101243751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19796.5 Da    PI: 7.8342
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g050900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.74.5e-111563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+     +fskRrng++K A+ L    d+++ +i+fs+tgk + y
  Solyc10g050900.1.1 15 KKIENEKALLSSFSKRRNGLFKAANNLVKKFDVDIGIIVFSPTGKPHSY 63
                        6899999999**********************************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.46767IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-10929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-102944IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-104465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MENKKTKGRQ KIPMKKIENE KALLSSFSKR RNGLFKAANN LVKKFDVDIG IIVFSPTGKP  60
HSYFHPTVDA VISRFQNPDM QLSDETHLAM IFARNSVNQL EKKLEELDIQ EKIEIDRTNY  120
LDQMTETRQK GWWESIEQLN EDEVSKFEEW LNVASFTMHY RLNQSIVSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g050900.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248901.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7JBP71e-122A0A3Q7JBP7_SOLLC; Uncharacterized protein
STRINGSolyc10g050900.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-24AGAMOUS-like 57
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]