PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g050900.1.1 | ||||||||
Common Name | LOC101243751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19796.5 Da PI: 7.8342 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.7 | 4.5e-11 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ +fskRrng++K A+ L d+++ +i+fs+tgk + y Solyc10g050900.1.1 15 KKIENEKALLSSFSKRRNGLFKAANNLVKKFDVDIGIIVFSPTGKPHSY 63 6899999999**********************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.46 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-17 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-19 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-10 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-17 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-10 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-10 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MENKKTKGRQ KIPMKKIENE KALLSSFSKR RNGLFKAANN LVKKFDVDIG IIVFSPTGKP 60 HSYFHPTVDA VISRFQNPDM QLSDETHLAM IFARNSVNQL EKKLEELDIQ EKIEIDRTNY 120 LDQMTETRQK GWWESIEQLN EDEVSKFEEW LNVASFTMHY RLNQSIVSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g050900.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248901.1 | 1e-123 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7JBP7 | 1e-122 | A0A3Q7JBP7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g050900.1.1 | 1e-123 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 6e-24 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g050900.1.1 |
Entrez Gene | 101243751 |
Publications ? help Back to Top | |||
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