PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g050210.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 389aa MW: 42416.9 Da PI: 10.5176 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.6 | 5.5e-13 | 310 | 354 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r +r++kNRe+A rsR+RK+a++ Le +v++L++ N++L+k+ Solyc10g050210.1.1 310 RRHKRMIKNRESAARSRARKQAYTFALEAEVAKLKEINEKLQKKQ 354 699**************************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.6E-11 | 306 | 371 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.852 | 308 | 353 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-10 | 310 | 357 | No hit | No description |
Pfam | PF00170 | 3.2E-11 | 310 | 357 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-13 | 310 | 364 | No hit | No description |
CDD | cd14707 | 4.71E-23 | 310 | 364 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 313 | 328 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGSGSFSLTR QSSMYSLTFE ELQSTCGFRK DVGSMNLEDL LKNISTAEES RGLASSAGVG 60 EGSMAAGTLQ RQGSLTLPRT LNQRTVDEVW RDFQNETTVS SNLGQKQSNL GEMTLEEFLV 120 RAGVVRDDNQ PNVTSNNVGF TGVLGEPSSN NNALNIAFQQ PTQSPGLLSK FSESNMLNVV 180 NVKSSQQQPQ QQQPLIPKKR NVDFASTMQL GNNCQLASPR ARAVVVSTSS RSVHATVVQG 240 GVMQNGVKGM AGLLSGVTFA PGGSPGNQLS SEMISKDKLY RSFLSPSPYA FNEGGRGRKS 300 CSTLEKVVER RHKRMIKNRE SAARSRARKQ AYTFALEAEV AKLKEINEKL QKKQAEFIDS 360 QKNQLLEKMN TSFGSKLRCL RRTLTGPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g050210.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244063 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-5f7 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089552.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1 | ||||
TrEMBL | A0A3Q7IH05 | 0.0 | A0A3Q7IH05_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g050210.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA776 | 24 | 97 | Representative plant | OGRP3984 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 3e-81 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g050210.1.1 |
Publications ? help Back to Top | |||
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