PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g049720.1.1
Common NameLOC101254954
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 299aa    MW: 33696.8 Da    PI: 6.1098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g049720.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-112242641055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Solyc10g049720.1.1 224 RKRRERINERLKTLQSLIPNG-----TKVDISTMLEEAVQYVKFLQ 264
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-14213280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.701214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13219273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-12223268No hitNo description
PfamPF000106.4E-9224264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEHVVSMSEG DWSSFSGMCF TEEADFMAQL LGNCSFPNEL PSNSGYWNIG HESNIGSSGG  60
REHSSFFFPP LSHESHYSSN SRPILMRNDS SITTERGLMD TNNPIEADEY FANNMEFDAN  120
MAEPLLDGKG LQLGRIDYED HSPTESSKKR VRLHCHVPKN KRSTKLQTEG KTVEMDMKSK  180
AVLQRQNSMV SCCSEDESNV SLELRRKSRA SRGSATDPQS MYARKRRERI NERLKTLQSL  240
IPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMYAP IAYNGMDLGL DLRIGNPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204226RRKSRASRGSATDPQSMYARKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g049720.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248915.10.0transcription factor bHLH139-like
TrEMBLA0A3Q7IGN70.0A0A3Q7IGN7_SOLLC; Uncharacterized protein
STRINGSolyc10g049720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-66bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]