PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g047040.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 330aa    MW: 35120.9 Da    PI: 8.3272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g047040.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09162187227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k e Cr +  +GtC++G++C+F Hg+
  Solyc10g047040.1.1 162 KSETCRWWEDSGTCRFGSKCRFVHGK 187
                         6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-12158192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8159191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145161188IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4161187IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6162187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQASNVHSFD GNVSPINAQN FIGRGRFYPG SKTTILDPYS SSDSSGSSSN KVSPLARYLC  60
PSSPVPFISD SPKHRSLVST SSGSRSGCGG GVPRSPLASV ENFEIPLMFR TPVKVEEDVV  120
VMDGILVEAK HGPRANKLSP STSDSGGRLS SSTPANDNSV HKSETCRWWE DSGTCRFGSK  180
CRFVHGKEDL RSTAFANRNQ SEALLCRSYT SGPSSYGPRG RSVHQQVHSA ASPAKAAKMS  240
TPTTTSTTTL KVFTKDKDPS SSDSSTSSTP TSNISSTDWC PLDDNIEVTL PSSGEKCASR  300
EDVNAHIQTV LYGPSGRKRL LACIDLVEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.125640.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g047040.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2455630.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-18g8 map 10, complete sequence
GenBankAC2455810.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-3n5 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248809.10.0mRNA decay activator protein ZFP36L1
RefseqXP_010327502.10.0mRNA decay activator protein ZFP36L1
RefseqXP_025883615.10.0mRNA decay activator protein ZFP36L1
TrEMBLA0A0V0IC541e-175A0A0V0IC54_SOLCH; Putative zinc finger protein 36, C3H1 type-like 1-like
STRINGSolyc10g047040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Representative plantOGRP1212144
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]