PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g018110.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20762.4 Da    PI: 6.5469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g018110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141665251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +ien+s r +tfskRr g+ KKA EL   Cd+   +++ s++g  y +ss
  Solyc10g018110.1.1 16 KIENESARLTTFSKRRSGLYKKACELVRECDVALGIVMSSPKGIPYSFSS 65
                        79*****************************************9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.689767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-12929IPR002100Transcription factor, MADS-box
PfamPF003196.3E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEHKKTAGRQ KISLAKIENE SARLTTFSKR RSGLYKKACE LVRECDVALG IVMSSPKGIP  60
YSFSSPTSNV VIDRFINPTA NLSSSDRLVA AEARKKVSQF YDILNELDER EKIANEKLDR  120
MNEARDLGWW ESIDQLNVRD VKKLEAWLIS GEFKLNEHLE QLENGASSSS QIPSDDANIS  180
PNVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g018110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682370.0S.lycopersicum DNA sequence from clone LE_HBa-303A6, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071580.11e-133agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7ICS47e-90A0A3Q7ICS4_SOLLC; Uncharacterized protein
STRINGSolyc10g018110.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-23AGAMOUS-like 29
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]