PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g018080.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17218.5 Da PI: 7.0442 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.6 | 6.7e-13 | 16 | 65 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien+s r +tfskRr g+ K A EL Cd++ +++ s++g y +ss Solyc10g018080.1.1 16 KIENESARLTTFSKRRSGLYKIACELVRECDVDLGIVMSSPKGIPYSFSS 65 79*****************************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.339 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-10 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-9 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-16 | 10 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-17 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-9 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-9 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEHKKTAGCQ KTSLAKIENE SARLTTFSKR RSGLYKIACE LVRECDVDLG IVMSSPKGIP 60 YSFSSQTSNV VINHFINPTA KLSSSDHLVA SEARKRVSQF NDILNELDER EKIANEKLDQ 120 MNEARDLGWW ESIDRLNVHD VMKLEAWLNL H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g018080.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468237 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-303A6, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027768133.1 | 1e-94 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3Q7ICS4 | 1e-108 | A0A3Q7ICS4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g018080.1.1 | 1e-109 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-18 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g018080.1.1 |
Publications ? help Back to Top | |||
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