PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g012390.1.1
Common NameLOC104649447
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17086.7 Da    PI: 5.2929
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g012390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.71.3e-073261841
                        HHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF 18 ngilKKAeELSvLCdaevaviifs 41
                        + ++K A+ L +LC++ +a++ifs
  Solyc10g012390.1.1  3 KSLFKRANDLAILCGIHIAILIFS 26
                        689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.152138IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-9361IPR002100Transcription factor, MADS-box
PfamPF003193.6E-7328IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MQKSLFKRAN DLAILCGIHI AILIFSVGRQ PIFFGMPDVE TVVQKFMEAN HPTAPRFYMK  60
IKKTEEENKE KGKSVEDNIA HRQLEDFESP YLGSLLKLYQ GLTEFEDLLN KEIDPTQLNQ  120
EIEKHEDPKI VSKMNVASSS YLPTDMLSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g012390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331270.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-201c12 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169511.15e-61PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4CYL51e-106K4CYL5_SOLLC; Uncharacterized protein
STRINGSolyc10g012380.1.11e-107(Solanum lycopersicum)
STRINGSolyc10g012390.1.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-11AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]