PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g012390.1.1 | ||||||||
Common Name | LOC104649447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 150aa MW: 17086.7 Da PI: 5.2929 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.7 | 1.3e-07 | 3 | 26 | 18 | 41 |
HHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 18 ngilKKAeELSvLCdaevaviifs 41 + ++K A+ L +LC++ +a++ifs Solyc10g012390.1.1 3 KSLFKRANDLAILCGIHIAILIFS 26 689********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.152 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-9 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-7 | 3 | 28 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MQKSLFKRAN DLAILCGIHI AILIFSVGRQ PIFFGMPDVE TVVQKFMEAN HPTAPRFYMK 60 IKKTEEENKE KGKSVEDNIA HRQLEDFESP YLGSLLKLYQ GLTEFEDLLN KEIDPTQLNQ 120 EIEKHEDPKI VSKMNVASSS YLPTDMLSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g012390.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233127 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-201c12 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169511.1 | 5e-61 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | K4CYL5 | 1e-106 | K4CYL5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g012380.1.1 | 1e-107 | (Solanum lycopersicum) | ||||
STRING | Solyc10g012390.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-11 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g012390.1.1 |
Entrez Gene | 104649447 |
Publications ? help Back to Top | |||
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