PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g012180.1.1
Common NameLOC101244040
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18824.5 Da    PI: 5.3835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g012180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.36.4e-1124501440
                        HHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF 14 skRrngilKKAeELSvLCdaevaviif 40
                        sk ++ ++KKA+ LS+LC+++va+ii+
  Solyc10g012180.1.1 24 SKMQKALFKKASDLSILCGIQVAIIIL 50
                        778899*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-112385IPR002100Transcription factor, MADS-box
PfamPF003191.1E-82450IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6852463IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESKNSNVDS AVAKDKRGEG GKISKMQKAL FKKASDLSIL CGIQVAIIIL FINRQPIVFG  60
KPDAESVINQ FIEANHPTAP RFYMKMKKKE EENKEKGKSI EDDIQSQDFE SPYLGSLLKL  120
YEGLTEFENQ LTKEIDLTQL NQEIEKHEDP KLMNVASSST LPTNFSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g012180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448870.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6i2 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248433.11e-119uncharacterized protein LOC101244040
TrEMBLA0A3Q7IDC81e-118A0A3Q7IDC8_SOLLC; Uncharacterized protein
STRINGSolyc10g012180.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-11AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]