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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc10g009110.1.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
ERF |
| Protein Properties |
Length: 223aa MW: 24239.4 Da PI: 9.2881 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g009110.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.7 | 9.2e-21 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+++++g+
Solyc10g009110.1.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAAREFRGA 76
6********.**********8...557*************************985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway |
| GO:0010200 | Biological Process | response to chitin |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0016604 | Cellular Component | nuclear body |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MAPKEKIGAV TAMAMVNLNG ISKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE 60
EAARAYDNAA REFRGAKAKT NFPKLEMEKE EDLKFAVKNE INRSPSQTST VESSSPVMVD 120
SSSPLDLSLC GSIGGFNHHT VKFPSSGGGF TGSVQAVNHM YYIEALARAG VIKLETNRKK 180
TVDYLGGGDS DSSTVIDFMR VDVKSTTAGL NLDLNFPPPE NM*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Les.4101 | 0.0 | callus| flower| fruit| leaf| root| trichome |
| Function -- GeneRIF ? help
Back to Top |
- The opposing patterns of regulation of mRNA accumulation are consistent with the activator function of Pti4 and a repressor function for LeERF3b in ethylene responses. [LeERF3b]
[PMID: 17570560]
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| Publications
? help Back to Top |
- Hongxing Z, et al.
Cloning and DNA-binding properties of ethylene response factor, LeERF1 and LeERF2, in tomato.
Biotechnol. Lett., 2005. 27(6): p. 423-8
[PMID:15834808] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Chen G,Hu Z,Grierson D
Differential regulation of tomato ethylene responsive factor LeERF3b, a putative repressor, and the activator Pti4 in ripening mutants and in response to environmental stresses.
J. Plant Physiol., 2008. 165(6): p. 662-70
[PMID:17570560]
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