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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc10g006510.2.1 |
| Common Name | LOC101264073 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
bHLH |
| Protein Properties |
Length: 232aa MW: 25762.4 Da PI: 7.2928 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g006510.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 33.1 | 9.8e-11 | 76 | 123 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ rE+ RR+++N++f eL ll ++ + +K +K++iL Av+ + +L
Solyc10g006510.2.1 76 SKACREKLRREKLNEKFMELAVLLEPS---RPPKTDKSAILVDAVRVVTQL 123
6789**********************9...99**************99888 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MVLPENTNWL YDYHYEDIVT PDVNFSVSGY SWSMQGFNGS TNASVDIDGS LGESDCVKES 60
GCKKRTRAES CTSSSSKACR EKLRREKLNE KFMELAVLLE PSRPPKTDKS AILVDAVRVV 120
TQLRGEAQKL KDSNLDLQEK IKELKVEKNE LRDEKQRLKS EKEKLEQQLK TMSAQPSFLP 180
PAMPGAFASP VQAAGTKLVP IISYPGVAMW QFMPPAAIDT SQDHVLRPPV A*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC233122 | 1e-146 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence |
| GenBank | AC240192 | 1e-146 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence |
| GenBank | AC240224 | 1e-146 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Li X,Zhang H,Ai Q,Liang G,Yu D
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Plant Physiol., 2016. 170(4): p. 2478-93
[PMID:26921305] - Aparicio F,Pallás V
The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
Mol. Plant Pathol., 2017. 18(2): p. 173-186
[PMID:26929142] - Liang G,Zhang H,Li X,Ai Q,Yu D
bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
J. Exp. Bot., 2017. 68(7): p. 1743-1755
[PMID:28369511] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786] - Samira R, et al.
The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
Plant Mol. Biol., 2018. 97(4-5): p. 297-309
[PMID:29882068]
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