PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 222aa MW: 24390.3 Da PI: 8.8166

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g006130.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.5e-20	28	76	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aaka++aa++ l+g Solyc10g006130.1.1 28 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDAAARTLRG 76 8*****.******883....5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.03E-18	27	84	No hit	No description
PROSITE profile	PS51032	23.011	27	84	IPR001471	AP2/ERF domain
SMART	SM00380	9.6E-37	27	90	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-12	27	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-10	28	39	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	28	85	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.9E-31	28	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-10	50	66	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRRGRATPAA AAAAVKPDGS GGLKEIRFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA 60 EDAAKAYDAA ARTLRGPKAK TNFPLPMYSQ HHQFNRSLNP NDRLVDPRLY SQEAPIICQR 120 PTSSSMSSTV ESFSGPRPPR QQTAVLPSRK HPRSPPVEPD DCRSDCDSSS SVVEDGDCEG 180 GNDNIVSSSL RNPLPFDLNF PPPMDDVYAN SNDLYCTALC L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-20	28	89	6	68	ATERF1
3gcc_A	3e-20	28	89	6	68	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.3041	0.0	callus\| flower\| fruit\| leaf\| root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
EAR motif of SIERF36 is most likely responsible for the strong early flowering phenotype and a reduction in stomatal density and photosynthesis that is common to both Arabidopsis and tobacco when SlERF36 is over-expressed. [SlERF36] [PMID: 25036097]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00194	DAP	Transfer from AT1G50640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g006130.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013241	0.0	Lycopersicon esculentum clone 134527F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001355161.1	1e-162	ethylene response factor F.1
Swissprot	Q9SXS8	8e-77	ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBL	A0A3Q7IBC2	1e-161	A0A3Q7IBC2_SOLLC; Uncharacterized protein
STRING	Solyc10g006130.1.1	1e-162	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3330	23	47
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	4e-34	ethylene responsive element binding factor 3

Link Out ? help Back to Top
Phytozome	Solyc10g006130.1.1
Entrez Gene	101249309

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Upadhyay RK, et al. The EAR motif controls the early flowering and senescence phenotype mediated by over-expression of SlERF36 and is partly responsible for changes in stomatal density and photosynthesis. PLoS ONE, 2014. 9(7): p. e101995 [PMID:25036097]