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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc10g005760.1.1 |
Common Name | LOC101268435 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 337aa MW: 37726 Da PI: 7.808 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc10g005760.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.9 | 2.6e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l +++q+G+++W++I+++ g+ R++k+c++rw +yl
Solyc10g005760.1.1 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 46 | 1.2e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++
Solyc10g005760.1.1 68 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLISEIATTL SPPQVPHLAE AALGCFKDEM LHLLTKKRIG FQFHTQFTNM 180 TSTHNNAPST SHVKHEENNN YKDNNTIEKI KYGLSRAIKE SDKNWETSVG GTTSSNFHDN 240 GGFSNYNFAN LLNDEDGSPW NQSLCSGSTC TAGGGGGELQ QQQQQQQQQN KKISNDNCED 300 SGKEIVVTTR NGSTTMFNTD CVLWDISSDD LMNPMV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help
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Source |
Description |
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC239470 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-60a6 map 1, complete sequence |