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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc10g005460.2.1 |
| Common Name | LOC101245208 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 314aa MW: 35686.2 Da PI: 7.7639 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc10g005460.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WTteEd++l+d+++++G+g+W+ ++ g+ R++k+c++rw +yl
Solyc10g005460.2.1 14 KGPWTTEEDQKLIDYIQKYGSGNWRILPKNAGLQRCGKSCRLRWINYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w++
Solyc10g005460.2.1 67 RGKFSFEEEETIIHLHSILGNK-WSAIAARLP-GRTDNEIKNYWNT 110
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MGRTPCCDKN GLKKGPWTTE EDQKLIDYIQ KYGSGNWRIL PKNAGLQRCG KSCRLRWINY 60
LRPDIKRGKF SFEEEETIIH LHSILGNKWS AIAARLPGRT DNEIKNYWNT NIRKKLLRMG 120
IDPITHSPRL DLLDLNSIFN PSLYNSTQLD NNISRLLGVQ SLVNPEILRL ANSLLSSHHQ 180
NQNFLLQSNF QENQLCNSYV QNKLTPFGQT SLIQNPINNI STCSNFNTPS VPFYSDTLAM 240
QQPNVEEQSS SNILNFNSQN FTFNSILPTL STPSSTPTSL NSNSSTISEE ERESYCSMLN 300
FDIPNILDVN EFM*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC244870 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30c5 map 10, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
Biomolecules, 2019.
[PMID:29880735]
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