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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Solyc10g005330.2.1 | ||||||||
| Common Name | LOC101256132 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 713aa MW: 78690 Da PI: 5.3603 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 63.3 | 3.4e-20 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+ qVk+WFqN+R+++k
Solyc10g005330.2.1 59 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 114
688999***********************************************998 PP
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| 2 | START | 203.7 | 7.7e-64 | 237 | 458 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77
ela +a++el+++a+ +ep+W+ ++n++e+ ++f+++ + ++ea+r+s+vv+ + lve+l+d++ qW++ ++
Solyc10g005330.2.1 237 ELAVAAMEELIRLAQTDEPLWMNQNsdnndLILNEEEYARTFPRGIGpkslgLKSEASRESAVVIIDYLHLVEILMDVS-QWTNFFTgivs 326
57899******************9999988899***********999********************************.*********** PP
EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
k ++lev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+++ ++ + v R++++pSg++i++++ng+
Solyc10g005330.2.1 327 KSTILEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLENLRSTS----VSRCRRRPSGCVIQELPNGY 413
***************************************************************9965....8******************* PP
EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
skvtw+ehv++++r + +++r+lv sgla+gak+wvatl+rqce+
Solyc10g005330.2.1 414 SKVTWIEHVEVDDRAVNNIYRPLVDSGLAFGAKRWVATLERQCER 458
*******************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 4.5E-21 | 42 | 114 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 9.19E-19 | 44 | 116 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 16.649 | 56 | 116 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 3.6E-18 | 58 | 120 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 7.8E-18 | 59 | 114 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 7.76E-18 | 59 | 117 | No hit | No description |
| SuperFamily | SSF55961 | 3.85E-38 | 228 | 460 | No hit | No description |
| PROSITE profile | PS50848 | 47.882 | 228 | 461 | IPR002913 | START domain |
| CDD | cd08875 | 4.37E-123 | 232 | 457 | No hit | No description |
| SMART | SM00234 | 6.1E-62 | 237 | 458 | IPR002913 | START domain |
| Pfam | PF01852 | 5.1E-54 | 238 | 458 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 2.3E-7 | 295 | 458 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 2.56E-24 | 476 | 704 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009845 | Biological Process | seed germination | ||||
| GO:0009913 | Biological Process | epidermal cell differentiation | ||||
| GO:0048825 | Biological Process | cotyledon development | ||||
| GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 713 aa Download sequence Send to blast |
MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFETKSGAD IMEGGASGDD QDPNKRPKKK 60 QYHRHTQHQI QELESFFKEC PHPDDKQRKD LGKRLGLEPL QVKFWFQNKR TQMKSQHERH 120 ENTQLRNEND KLRAENIRYK EALTTATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLNYPQLP SLGGNILGEM FTTTTSAGDL LRSISGPTDA DKPIVIELAV 240 AAMEELIRLA QTDEPLWMNQ NSDNNDLILN EEEYARTFPR GIGPKSLGLK SEASRESAVV 300 IIDYLHLVEI LMDVSQWTNF FTGIVSKSTI LEVLSTGVAG NYNGALQVMT AEFQVPSPLV 360 PTRENYFVRY CKQHGDGTWA VVDVSLENLR STSVSRCRRR PSGCVIQELP NGYSKVTWIE 420 HVEVDDRAVN NIYRPLVDSG LAFGAKRWVA TLERQCERLA SVMASNIPTG DVITSPEGRK 480 SMLKLAERMV MSFCAGVGAS TAHTWTTLSG SGADDVRVMT RKSIDDPGRP PGIVLSAATS 540 FWMPVPTKRV FDFLRDENSR NEWDILSNGG LVQEMAHIAN GRDSGNSVSL LRVNSGNSSQ 600 NNMLILQESC LDITGSYVIY APVDIAAMNV VLSGGDPDYV ALLPSGFAIL PDGSSNAENS 660 NIAGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKASITCE NA* |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Les.22019 | 0.0 | fruit| trichome | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Solyc10g005330.2.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010327237.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
| Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
| TrEMBL | A0A3Q7IAN1 | 0.0 | A0A3Q7IAN1_SOLLC; Uncharacterized protein | ||||
| STRING | Solyc10g005330.2.1 | 0.0 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA932 | 24 | 91 |
| Representative plant | OGRP145 | 15 | 136 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21750.2 | 0.0 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Solyc10g005330.2.1 |
| Entrez Gene | 101256132 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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