PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g005240.2.1
Common NameLOC101245994
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 346aa    MW: 39719.2 Da    PI: 6.5016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g005240.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l + +   G g+W++++r  g+ R++k+c++rw +yl
  Solyc10g005240.2.1 13 RGLWSPEEDEKLMRHISTQGHGCWSSVPRLAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding49.97.5e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+  ++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Solyc10g005240.2.1  66 RGSFSEQEERTIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24463IPR009057Homeodomain-like
PROSITE profilePS5129415.925860IPR017930Myb domain
SuperFamilySSF466895.99E-2810107IPR009057Homeodomain-like
SMARTSM007174.9E-111262IPR001005SANT/Myb domain
PfamPF002491.8E-131360IPR001005SANT/Myb domain
CDDcd001674.59E-91660No hitNo description
PROSITE profilePS5129424.77561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2464116IPR009057Homeodomain-like
SMARTSM007177.6E-1565113IPR001005SANT/Myb domain
PfamPF002491.3E-1466109IPR001005SANT/Myb domain
CDDcd001671.13E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLMRHIST QGHGCWSSVP RLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFS EQEERTIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLKN KSNNSTKKSN NYTHHIQDST SIFTIDHTST NKGITSMDLK STFSPYCDNI  180
TYNHTPIVPN IEYQNPTFAW SEQINHNNTV ITTLQSQTSD QRTRDSLLDF TSCCLMENAA  240
NINVSSYINE NSMWNGTGLE PTTLNPINGQ EEQEMQVVQL QGDQEFPIIK TKFCDDQEDV  300
YKVVHDHDQT VEKTFNDSSN FDFEFMDSGL YTNVNSSMDQ LSWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g005240.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448040.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-74b18 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248511.10.0transcription factor MYB86-like
TrEMBLA0A3Q7J5530.0A0A3Q7J553_SOLLC; Uncharacterized protein
STRINGSolyc10g005240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-78myb domain protein 67
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]