PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g098110.2.1
Common NameLOC101263058
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 358aa    MW: 37935.8 Da    PI: 8.2481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g098110.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.8e-11290335655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  Solyc09g098110.2.1 290 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 335
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15287350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-11288339No hitNo description
Gene3DG3DSA:4.10.280.105.5E-14289349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMSHTSTT AGGAGGGLTR YGSAPGSFLT TAVEAVVNGN HEFASHGSHH  60
SHLGPSRFFQ SNLASTSLNS ESTSKAKEQS NLQRSIGFND LTIGGGSGAG GGVLPTTSTT  120
PLVRHSSSPA RFLNQLATAA GDTVSMGRGS YNPKGGGDSG RGITRLNSQL SFTTQEALSQ  180
IAEENEDIEG TSIANGHRKS THSYASASSF AMGSWEDNNS IMFSVTPSKR SKQISNDIVN  240
GLDDGETQFQ FGLSQTALEI ASMDRLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI  300
SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IRTLQDQVQN LNTELENCKC GCRKSSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.118290.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g098110.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476030.0Solanum lycopersicum chromosome 9 clone C09HBa0109D11, complete sequence
GenBankEU1390720.0Solanum lycopersicum chromosome 9 clone C09HBa0226D21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326935.10.0transcription factor bHLH128 isoform X2
SwissprotQ8H1024e-81BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A3Q7IA680.0A0A3Q7IA68_SOLLC; Uncharacterized protein
STRINGSolyc09g098110.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-76bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]