PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 252aa MW: 29775.3 Da PI: 9.6667

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g090790.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2.1e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed ll+++vk++G g+W+++ar g++R +k+c++rw +yl Solyc09g090790.2.1 15 KGPWTSDEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 62 79********************************************97 PP
2	Myb_DNA-binding	51.2	2.8e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++++++ ++G++ W+tIar ++ gRt++++k++w+++ Solyc09g090790.2.1 68 RGQITPHEERIILELHSRWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.789	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-16	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	16	69	IPR009057	Homeodomain-like
CDD	cd00167	7.48E-11	17	62	No hit	No description
PROSITE profile	PS51294	24.149	63	117	IPR017930	Myb domain
SMART	SM00717	1.1E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	68	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-24	70	116	IPR009057	Homeodomain-like
CDD	cd00167	9.00E-10	72	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGSNWGFIEE VGWRKGPWTS DEDRLLIEYV KLHGEGRWNS VARLTGLRRN GKSCRLRWVN 60 YLRPDLKRGQ ITPHEERIIL ELHSRWGNRW STIARSLPGR TDNEIKNYWR THFKKKTKNS 120 SDNSEKSRAR LWKKQQFQQQ QQQQQQINNQ IDIKNVMSLP TMPQGKQEMT ILYPNNMIDQ 180 QDQADFFYSS LNNSTSISQS EPSSSNEDIM WDDLWNLDDF YGHFMINTTT YNNKTNTIPC 240 LQQMATTPTF Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-28	15	117	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24347	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g090790.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247779.1	0.0	myb-related protein 305
TrEMBL	A0A3Q7I8X0	0.0	A0A3Q7I8X0_SOLLC; Uncharacterized protein
STRING	Solyc09g090790.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	6e-74	myb domain protein 305

Link Out ? help Back to Top
Phytozome	Solyc09g090790.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]