PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc09g090260.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 27881.3 Da PI: 9.3916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 20 | 42 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C F+++ ++++Hirt H Solyc09g090260.1.1 20 RCPLCYGAFRTHLQFMNHIRTtH 42 8********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 21 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MSNANVPPPS FLSSCRVLLR CPLCYGAFRT HLQFMNHIRT THLLTSERNT ILCSHAYASN 60 ILSPENPLGS QLAAPQHTSS QNVIRHSSGY PSATLLRENM LSAQSTTPQR VSPQNVNLRP 120 PLYSSGSLLL SSVQHAAPQN VIQRCPLYGS GNFFTGNMSS PQPAAAQHHA TSRGNNNIVI 180 LSSNRNSPTR ISDRAPPINW QQMASRNRVG GPNSNDSAID CTRSLANRLN VPVPTNVDEL 240 ANIADEQNDV DLTLRL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc09g090260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7I8M3 | 0.0 | A0A3Q7I8M3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g090260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15082 | 3 | 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc09g090260.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|