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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc09g082670.2.1 |
Common Name | LOC101254638 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HSF |
Protein Properties |
Length: 357aa MW: 41757.6 Da PI: 5.3225 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc09g082670.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 113.3 | 1.6e-35 | 38 | 130 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+ye ++d+++++++sws +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+++
Solyc09g082670.2.1 38 FLTKTYEFVDDQNTNNVVSWSIGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDH---------WEFAHEGFLRGQRH 119
9********************999******************************************99.........************** PP
XXXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkkse 103
ll++i+r+k++
Solyc09g082670.2.1 120 LLKTIRRRKTS 130
********987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MDPNFGVPIK EEFPRSNEPT MWIPQPMEGL HENGPPPFLT KTYEFVDDQN TNNVVSWSIG 60 NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK VNPDHWEFAH EGFLRGQRHL 120 LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGEIDRL RREKKDLMME LVELKQHQQT 180 TKSHIKSMEE KLKRTEAKQQ QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIRNKRRRQ 240 IDHHQGPSNI VGELDHSFNN SDGNFNIKME PHEYYYGEMN GFDNLELETS LGMSMQGGPS 300 ENTINFEDKS IDHEGFWEGL LNESIEDEIN LLEGENEEDH VDVLAHQLGF LGSTPN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 224 | 238 | RRKELEEEIRNKRRR |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |