PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 156aa MW: 17496.2 Da PI: 8.7541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g074810.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	7	38	22	55
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 Lr+l+P + ++K s ++ Av+YIk+Lq Solyc09g074810.2.1 7 SLRSLIPIEF--IKGKRSASDHMHAAVNYIKYLQ 38 7*****65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.613	1	37	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-4	3	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-6	4	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MANLVTSLRS LIPIEFIKGK RSASDHMHAA VNYIKYLQKN IQELDNTRKC IISLDNQNKS 60 STIVDIFQQN NNCVTVNKCE DGMEILINVN NSNKEDIFSL SKVLRWLLKQ GLNVVSCDNS 120 KKDERTLIRI QCQVSDISSG LTVVGLQKKL TDVIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g074810.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF647601	0.0	Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010326593.1	1e-106	transcription factor bHLH125-like
Refseq	XP_010326594.1	1e-106	transcription factor bHLH125-like
TrEMBL	A0A3Q7I5D3	4e-91	A0A3Q7I5D3_SOLLC; Uncharacterized protein
STRING	Solyc09g074810.2.1	1e-107	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	3e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc09g074810.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]