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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc09g074640.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C3H |
Protein Properties |
Length: 436aa MW: 46925.6 Da PI: 8.7118 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc09g074640.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 34.9 | 2.7e-11 | 49 | 74 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++ + C++++r+G C yG++C+F+H+
Solyc09g074640.2.1 49 PGVPDCSYYLRNGSCGYGPNCRFNHP 74
5789*********************8 PP
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2 | zf-CCCH | 40.9 | 3.5e-13 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C++f+rtGtCk+G +CkF+H++
Solyc09g074640.2.1 97 GEPICQYFLRTGTCKFGVSCKFHHPR 122
579*********************96 PP
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3 | zf-CCCH | 34.3 | 3.9e-11 | 146 | 168 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C ++++tG+Ck+G +CkF+H++
Solyc09g074640.2.1 146 ECTYYLKTGHCKFGITCKFHHPQ 168
7********************97 PP
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4 | zf-CCCH | 37.8 | 3.3e-12 | 299 | 324 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++ +tG Ck+G++CkF+H+p
Solyc09g074640.2.1 299 GQSICQYYVKTGDCKFGSSCKFHHPP 324
7899********************97 PP
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5 | zf-CCCH | 32.8 | 1.2e-10 | 345 | 370 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ +C+f++ G+Ck+G+ CkF H++
Solyc09g074640.2.1 345 GVQPCSFYLLKGFCKFGSACKFDHPM 370
6789********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.84 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-9 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.638 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-11 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-6 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 146 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-4 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.854 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-6 | 301 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-7 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 345 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 347 | 368 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MELYGPSSGS NGSQSDHQSE WVSVEQETGL DGSMQKLGLF GREVYPERPG VPDCSYYLRN 60 GSCGYGPNCR FNHPSDRDRR SGGKMQLGGV EFPERMGEPI CQYFLRTGTC KFGVSCKFHH 120 PRNFGGSLSN IPLNTYGYPL RMGEIECTYY LKTGHCKFGI TCKFHHPQPA GMSVPAPARP 180 FYPTVQSLPA PPEECNSALT GLRVARPPIL PGSYVPSAYG PVLLHPGVVT IQNWSPYSGP 240 VSPALSPGVH PSAGLTSVYG MSQLASSPHA FAGPYSPLPP AASPSSKTQK GKSFPERPGQ 300 SICQYYVKTG DCKFGSSCKF HHPPDWIASK TNCAISPIGL PLRPGVQPCS FYLLKGFCKF 360 GSACKFDHPM GTVQYSSSAS SLPDLQVAPY MLRSSFTLAP MLLPELQAGF VTGSKVDVSL 420 SRAPSSMKVQ LVQLT*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Les.19177 | 0.0 | callus| floral bud| flower| fruit| leaf| stem |