PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g074560.2.1
Common NameLOC101258781
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 374aa    MW: 42227 Da    PI: 6.1592
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g074560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-061355339
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        ++ C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  Solyc09g074560.2.1 13 QHLCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 55
                        578*****************************66778888875 PP
2zf-B_box23.31.3e-075899542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                         C+++++ ++++ C +  + lC++C  e+H+     H+++pl
  Solyc09g074560.2.1 58 LCNLCDSSPASILCCTETSVLCQNCDWESHNKllslHERRPL 99
                        6*****************************879999999886 PP
3CCT621.9e-21322363142
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                         Re a++RYkeK+ktR++eK+irYesRKa+Ae+R R+KGrF+k
  Solyc09g074560.2.1 322 RETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAK 363
                         99***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.941158IPR000315B-box-type zinc finger
SMARTSM003362.1E-121158IPR000315B-box-type zinc finger
PfamPF006431.8E-51455IPR000315B-box-type zinc finger
CDDcd000212.86E-61555No hitNo description
PROSITE profilePS501199.6135499IPR000315B-box-type zinc finger
CDDcd000214.65E-45899No hitNo description
SMARTSM003360.175999IPR000315B-box-type zinc finger
PROSITE profilePS5101714.862322364IPR010402CCT domain
PfamPF062033.5E-16322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTEVKKDEEN HHQHLCDFCG NNTALLYCRA DSAKLCFTCD REVHSTNQLF TKHTRWLLCN  60
LCDSSPASIL CCTETSVLCQ NCDWESHNKL LSLHERRPLE GFTGCPSVSE LLSILGFEDL  120
GKKELLCGGD DGAYGFSDWV IWDAPSVVTL DDLIANNNES RHNYQAIGVP PLPKNRNAAC  180
GKHKEEILGQ LRELSKLEPN SGDDQDENVP TTGFQSMEPV QNCPLRYKGS GFMQRSDQHV  240
VPSSEGSAFH WHGDTGEFVD QGFSSSLTDC FIETKCLLPD RDSDVCDASG GGNEEQSHHP  300
TTTETFQMVP KVVHRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKAR AETRTRIKGR  360
FAKMDYRDSS VHQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.232150.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g074560.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0Lycopersicon esculentum clone 132507F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247458.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3Q7I5790.0A0A3Q7I579_SOLLC; Uncharacterized protein
STRINGSolyc09g074560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-85B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]