PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 157aa MW: 17764.4 Da PI: 7.9597

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g066350.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66	7.2e-21	13	64	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f taeeAa+a+++a+ +l+g+ Solyc09g066350.1.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 64 8******.******96665..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-32	13	72	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-14	13	64	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-24	13	72	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.053	13	71	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-35	13	77	IPR001471	AP2/ERF domain
CDD	cd00018	2.79E-29	13	73	No hit	No description
PRINTS	PR00367	1.5E-11	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MENEDQRGRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFETAEEA ARAYDRAAFS 60 LRGHQAILNF PNDGHYHINN NTNVPLGVGP SYNTPSTMGN NMNMSSSSSA SASASAFSDD 120 RHDHGEKVEF EYLDNNLLDE LLASQVHRHD NKRPKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-29	5	73	2	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g066350.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT990489	3e-06	S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247349.1	1e-113	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	3e-39	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3Q7I4S1	1e-112	A0A3Q7I4S1_SOLLC; Uncharacterized protein
STRING	Solyc09g066350.1.1	1e-113	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	9e-27	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc09g066350.1.1
Entrez Gene	101247159

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]