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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Solyc09g066340.1.1 |
| Common Name | LOC101246862 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
ERF |
| Protein Properties |
Length: 132aa MW: 14858.5 Da PI: 7.4984 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc09g066340.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 64.4 | 2.4e-20 | 19 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +g+++AeIrd ++ng r++lg++ tae+Aa+a+++a+ +++g
Solyc09g066340.1.1 19 KYRGVRKRP-WGKYAAEIRDTNNNG--SRVWLGTYATAEDAARAYDKAAFQMRG 69
8********.**********65565..*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 132 aa
Download sequence Send
to blast |
MNEDNSTIKK KESCVGEVKY RGVRKRPWGK YAAEIRDTNN NGSRVWLGTY ATAEDAARAY 60
DKAAFQMRGR FAVLNFPHEY PSDHHSSSSY SMSSSSTSCS SVKQVIEIEY LDDKLLEELL 120
GLESDKSQYN K*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY192369 | 4e-08 | Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds |
| GenBank | AY275554 | 4e-08 | Lycopersicon esculentum ethylene response factor 2 mRNA, complete cds |
| GenBank | AY559314 | 4e-08 | Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds |
| GenBank | BT014126 | 4e-08 | Lycopersicon esculentum clone 133235F, mRNA sequence |
