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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g066030.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 724aa MW: 82706.9 Da PI: 6.8181 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.8e-18 | 25 | 77 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le++F+k+++p++++ ++LA++ gL+ +qVk+WFqN+R++ k Solyc09g066030.1.1 25 YHRHSMEQIQRLEAFFNKCPHPDEDQQKQLAREAGLDHKQVKFWFQNKRTQTK 77 567899********************************************988 PP | |||||||
2 | START | 106.2 | 5.3e-34 | 246 | 463 | 5 | 205 |
HHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 5 eaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 + ++e v + + ++p+Wv s + ++ e++ + +++v ++e ++++g+v m++++l +ld +W + ++ ka t Solyc09g066030.1.1 246 ASMNEMVELWKTNDPFWVDPSsdeKFSIHRESYGRKYSNQVlpyetstTRIESSKDCGIVSMTAVELIHNFLDPV-KWMNLFPtivtKART 335 67999999999*******9887774444445555444555566667999*************************9.99999999999**** PP EEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 +ev++sg g +qlm+ +l lsplv R+f f+R++rql a +w+ vdvS d ++ ++ +++ + ++pSg++i++++ng skvtwve Solyc09g066030.1.1 336 IEVLDSGtwgGSIQLMYEKLHILSPLVEaREFFFIRCCRQLDATTWIMVDVSYDIFNEIQSGAPCY-SWKFPSGCVIQDMGNGQSKVTWVE 425 ***************************99*********************9999887776444443.579********************* PP -EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 169 hvdl.kgrlphwllrslvksglaegaktwvatlqrqce 205 hv +++++ ++r l+ + a gak+w tlqr e Solyc09g066030.1.1 426 HVQIfEKYQVNRIFRDLLCGREAYGAKRWIVTLQRMSE 463 ***7366788************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 6 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-17 | 11 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.9E-14 | 17 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.92E-14 | 18 | 80 | No hit | No description |
PROSITE profile | PS50071 | 15.856 | 19 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 25 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 31.587 | 233 | 467 | IPR002913 | START domain |
CDD | cd08875 | 2.71E-74 | 237 | 463 | No hit | No description |
SuperFamily | SSF55961 | 2.61E-21 | 240 | 428 | No hit | No description |
SMART | SM00234 | 1.7E-17 | 242 | 464 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-27 | 246 | 463 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.2E-6 | 282 | 427 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.47E-7 | 488 | 682 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MSDSGKEPIG ELSNSQKRSK RQSQYHRHSM EQIQRLEAFF NKCPHPDEDQ QKQLAREAGL 60 DHKQVKFWFQ NKRTQTKTQN ERSINNALRK EKERLLSENK AMKEAMKNIM CPQCDGPPIG 120 KEERERNIEN MKTENQWLTE QCEKVSNLIS SVVGRPFVMD SNLAPPKLTL GSSSNSSDEN 180 LLNQNICGYP IRYPALCHEN NQNNNNVQAH SININNIPAM SSSPQEHDEF HHDSRQQTIM 240 FETIVASMNE MVELWKTNDP FWVDPSSDEK FSIHRESYGR KYSNQVLPYE TSTTRIESSK 300 DCGIVSMTAV ELIHNFLDPV KWMNLFPTIV TKARTIEVLD SGTWGGSIQL MYEKLHILSP 360 LVEAREFFFI RCCRQLDATT WIMVDVSYDI FNEIQSGAPC YSWKFPSGCV IQDMGNGQSK 420 VTWVEHVQIF EKYQVNRIFR DLLCGREAYG AKRWIVTLQR MSERNSFSMG TTYPTTHDFK 480 GVFHDPKGIK NTIKVSQRMV KSFFEILSMA DKLDFPTSSQ PNRGDRISIR KNEEITQPKG 540 FIAIATTSLW LPRSFQDVFN FFEDDKTRNQ WDILTGENNV IELDRVLTGT FPANNITIIQ 600 PYNMYKEMLV LEEKSINEMG AFLVYAPIEL RVITSIVNGC DATKVPILPS GIIISPDGRL 660 SSNRYNTANA QNGSILTVVF QILICDNNNP TSKQQQMETV ASVHGVLSAT ILKIKEALGC 720 SDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g066030.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010930 | 1e-126 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071156.1 | 0.0 | homeobox-leucine zipper protein HDG8-like | ||||
TrEMBL | A0A3Q7I5T0 | 0.0 | A0A3Q7I5T0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g066030.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-151 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g066030.1.1 |
Publications ? help Back to Top | |||
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