PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g065820.2.1
Common NameLOC101243823
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 303aa    MW: 32064.1 Da    PI: 5.9703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g065820.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10150194554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+YIk L
  Solyc09g065820.2.1 150 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYIKFL 194
                         99***********************55......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-15143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-8150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-11151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPSEGPS DDFFDQILGF PAYNGAEPNL AGNDAGAIPP AMMLQLNSGD GSSQFTGVGL  60
GVGLGGGGFH GHGGGGSFPL GLSLEQGKGG FLKMDDVSAP GRRFRDDVVD SRASSSVKPG  120
FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR  180
AVMLDEIVDY IKFLRLQVKV LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE  240
KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP  300
PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.152260.0callus| flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g065820.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142100.0Solanum lycopersicum chromosome 9 clone C09HBa0135N15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247209.10.0transcription factor UNE12
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3Q7I4G40.0A0A3Q7I4G4_SOLLC; Uncharacterized protein
STRINGSolyc09g065820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.23e-85bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]