PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g065670.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 471aa MW: 51502.5 Da PI: 8.9169 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Solyc09g065670.2.1 44 FVCEICNKGFQRDQNLQLHRRGH 66 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00083 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Solyc09g065670.2.1 120 WKCDKCSKIYAVQSDWKAHSKTC 142 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 43 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.8E-6 | 43 | 66 | No hit | No description |
SMART | SM00355 | 0.017 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 44 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.4E-5 | 44 | 66 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 108 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.8E-6 | 115 | 140 | No hit | No description |
SMART | SM00355 | 180 | 120 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MVSNHNHHEQ PPKIKKKRNL PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ 60 LHRRGHNLPW KLKQRTNKEN KKKAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW 120 KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSA 180 NSGLMHRAAA TSTIANSAAI ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV 240 TTHISLNPWE PQIPLNPNHT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHR 300 GSFSIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP 360 GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGGGG GGGQVLPTNG NVGNGLLLSY 420 GGNRMQDFQQ TLYERDNSVL KHHPLGFGFA GAGAGAGAAA DSTTGTWGDC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 116 | 182 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 116 | 182 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24053 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g065670.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247200.1 | 0.0 | protein indeterminate-domain 9 | ||||
TrEMBL | A0A3Q7I4C6 | 0.0 | A0A3Q7I4C6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g065670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-112 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g065670.2.1 |
Publications ? help Back to Top | |||
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