PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g065100.1.1 | ||||||||
Common Name | AH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 681aa MW: 75007.4 Da PI: 4.8287 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.7e-14 | 485 | 531 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Solyc09g065100.1.1 485 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-49 | 11 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.644 | 481 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 485 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.56E-16 | 485 | 535 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 485 | 542 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-18 | 485 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-18 | 487 | 536 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MEIIQPNSLQ LQNMLQNSVQ SVKWTYSIFW QFCPKQGVLV WRDGYYNGAI KTRKTVQPME 60 VTAEEASLHR SQQLRELYDS LSAGDSNPPA RRPSAALSPE DLTESEWFYL MCVSFSFPPP 120 IGLPGKAYSK KHHIWIMGAN DVDSKVFCRA ILAKTVVCIP LLDGVVELGT IEKVQEDIGF 180 IHRVKSFFNE PQQAQPPKPA LSEHSTSDPA AFSEPHFYFS NTPSSAGICP ADQDGRITGE 240 EENEDEDEDE AEDDEDENDE AELDSDGIAI QSGAGAANPM AAEASELMQL DMSEAIRLGS 300 PDDGSNNMDT DLYLDGISQA GNTADSFKAE TAISWANFQD LQHLPGIPSY DELSQEDTHY 360 SQTVSAVLEH LSNTSSKFAS SATIMGSISP DSAQSAFTLW PVTCSPNLSH CRRHDIGDGS 420 GTTSQWLLKS ILFTVPFLHS TKKLSEALSP KSRDAAAADS SAAASRFRKG CTINSCTQQE 480 ETSGNHVLAE RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKVQDLEAR 540 DRHTEITKKS DEKSGSPIVK AFPVKGKRRM KSTVEGSIVG APAKMTGSPP MEEEVLQVEV 600 SIIENDALVE LRCPYKEGLL LDVMQVLREL KVEVVAIQSS LSTGLLLAEL RAKVKENIYG 660 RKASILEVKK SINQIIPRVN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-20 | 5 | 189 | 3 | 193 | Transcription factor MYC3 |
4rqw_B | 4e-20 | 5 | 189 | 3 | 193 | Transcription factor MYC3 |
4rs9_A | 4e-20 | 5 | 189 | 3 | 193 | Transcription factor MYC3 |
4yz6_A | 4e-20 | 5 | 189 | 3 | 193 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 489 | 494 | ERRRRE |
2 | 490 | 495 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g065100.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010326368.2 | 0.0 | basic helix-loop-helix protein A isoform X1 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A3Q7I3M4 | 0.0 | A0A3Q7I3M4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g065100.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9028 | 20 | 22 | Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 7e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g065100.1.1 |
Publications ? help Back to Top | |||
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