PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g061950.1.1 | ||||||||
Common Name | LOC101251029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 20138.1 Da PI: 9.3256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.9 | 4.6e-12 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ien++ r v+fskR+++++ A+ + ++a+v v++fs++gk Solyc09g061950.1.1 15 KLIENERARMVSFSKRKKTLFEDAHKFATRTGADVGVMLFSPSGK 59 569*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.381 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-15 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-19 | 8 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-8 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-17 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-8 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-8 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MENENKKGKQ KIEMKLIENE RARMVSFSKR KKTLFEDAHK FATRTGADVG VMLFSPSGKP 60 YSNDSATIAD IIDRFLKVKQ EDHKRDYAEG ESNGFEALKD LHKELQAWND KEKKRKLMHK 120 IMHPSLEIPS DKHMEEQKLA LKLKVEKFKN EIQSAITTEH LKFDLNVVPD PEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g061950.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247303.1 | 1e-124 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A3Q7I4P3 | 1e-123 | A0A3Q7I4P3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g061950.1.1 | 1e-123 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-16 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g061950.1.1 |
Entrez Gene | 101251029 |
Publications ? help Back to Top | |||
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