PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 341aa MW: 39521.6 Da PI: 6.6092

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g055650.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.9e-18	99	145	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l ++vkq+G ++W+ Ia+ m gR +kqc++rw+++l Solyc09g055650.1.1 99 KGQWTEEEDRILMKLVKQFGLKRWAQIAENMV-GRAGKQCRERWHNHL 145 799***************************.***********97 PP
2	Myb_DNA-binding	51.7	2e-16	151	193	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + W++eE+ lv+a+kq G++ W+ I ++++ gRt++ +k++w+ Solyc09g055650.1.1 151 KETWSEEEEVMLVEAHKQIGNK-WAEIGKRIP-GRTENAIKNHWN 193 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.137	94	149	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-30	98	192	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-16	98	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-27	100	153	IPR009057	Homeodomain-like
CDD	cd00167	9.59E-15	102	145	No hit	No description
Pfam	PF13921	3.1E-19	102	160	No hit	No description
PROSITE profile	PS51294	20.481	150	200	IPR017930	Myb domain
SMART	SM00717	5.4E-15	150	198	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-10	153	196	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-19	154	199	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEGGDREGNH YDLPYNFSFY QQFPAPLTDI NRLLWSNQNV FTHQHAGGCY DGTSGYNSNF 60 PEQSLKNNVN IEENGAQYWI NQEQKKTGKN AKEVTMLVKG QWTEEEDRIL MKLVKQFGLK 120 RWAQIAENMV GRAGKQCRER WHNHLRPDIK KETWSEEEEV MLVEAHKQIG NKWAEIGKRI 180 PGRTENAIKN HWNATKRRQI SRRNKLKKEE RSNVLQDYIR SKYFSDDMSI SSSSSTTPPT 240 NDNNNMKNPC PYLYPYSDDD DDDTPSLLTN QTYDDEMNFM QKLFGNNSLD GANMTTQHQL 300 YLHQAEYDQA ASSSFSSGRN KDMVLSSSYP DQQTSTNKFF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	8e-45	96	200	1	105	C-Myb DNA-Binding Domain
1msf_C	8e-45	96	200	1	105	C-Myb DNA-Binding Domain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	208	RRNKLKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g055650.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071100.1	0.0	transcription factor MYB119-like
TrEMBL	M1DRH7	1e-142	M1DRH7_SOLTU; Uncharacterized protein
STRING	Solyc09g055650.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4825	19	41
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	3e-62	myb domain protein 98

Link Out ? help Back to Top
Phytozome	Solyc09g055650.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]