PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g018460.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 501aa    MW: 57788.1 Da    PI: 5.2004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g018460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.84.8e-491354993373
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL    ea+++g++ela+ ++  ++   +p g++++R+a+ + +  ++  ++         +  ++++   +   aa+k+f++++P+ kf
  Solyc09g018460.1.1 135 HLLSVYGEAMENGHKELAEVIIRCIKGKINPLGESLERVASNLFQHTEEDDQE---------SYLKQES--NKIIEAAFKAFYQIFPLGKF 214
                         6777778999*****************************98755443333333.........1222222..2333458899********** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         +h++aN+aI ea+  e +++HiiD+d+++G+QWp++++a++++      lR+T +++ +++++ + eet++rL ++A+ +g++++ + ++ 
  Solyc09g018460.1.1 215 AHFAANSAIIEAMPDEsQTIHIIDYDMGKGIQWPPIIKAMSQK---RKILRLTSIKK-STSDHWRFEETKRRLVDYANLFGLTLQVDEMTF 301
                         *************998899**********************97...457********.66799************************9855 PP

                GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnse.....sFlerflealey 263
                         +   ++l+  + r k+ E l+ n+++q  ++ ++   ++        +e+L +  s+   +v++ + ea  ns+     +F   f + l +
  Solyc09g018460.1.1 302 EeLASELRRMKKRGKRSEWLVFNCMFQFSYMGKRMRRIDAlgflkLAKELLLANSSTHRGLVTFGDGEAMDNSHhntnnTFSSYFNKNLLH 392
                         5133445555556666***************97777777644443455566666666788******99766655555569*********** PP

                GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                         y ++f+sle  +p++  ++r+ +E  +l++e+++    ++ e      ++ + ++  +e+G++ +++s+++  qak ++++ +   ++v  
  Solyc09g018460.1.1 393 YQSIFESLELYFPSHLaQARVAMESLFLAPEVCSFSWFQNWE------EMTNVSDSCSEMGLQGMRISKENLLQAKEVVNERETP-FKVRi 476
                         ************99877***************9988777776......56677899*************************9944.65544 PP

                GRAS 353 ..eesgslvlgWkdrpLvsvSaW 373
                           e+++++vl Wk+ ++v vS W
  Solyc09g018460.1.1 477 eeERQHEMVLEWKGISIVRVSTW 499
                         467799***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.718107478IPR005202Transcription factor GRAS
PfamPF035141.6E-46135499IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIQSEILHNS WSSTNQIHPF YEYQNHVISN YSSLNSKDQD SSEISLSDFT SLFSDDVLND  60
LPMDDIEFVD VSRWLNDSEN EGNENTKITS ETKKDGDSCS PALSSISIDT STTIQSRNDV  120
ISQSREIDNQ MRIHHLLSVY GEAMENGHKE LAEVIIRCIK GKINPLGESL ERVASNLFQH  180
TEEDDQESYL KQESNKIIEA AFKAFYQIFP LGKFAHFAAN SAIIEAMPDE SQTIHIIDYD  240
MGKGIQWPPI IKAMSQKRKI LRLTSIKKST SDHWRFEETK RRLVDYANLF GLTLQVDEMT  300
FEELASELRR MKKRGKRSEW LVFNCMFQFS YMGKRMRRID ALGFLKLAKE LLLANSSTHR  360
GLVTFGDGEA MDNSHHNTNN TFSSYFNKNL LHYQSIFESL ELYFPSHLAQ ARVAMESLFL  420
APEVCSFSWF QNWEEMTNVS DSCSEMGLQG MRISKENLLQ AKEVVNERET PFKVRIEEER  480
QHEMVLEWKG ISIVRVSTWM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308316RRMKKRGKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.183040.0callus| flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g018460.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3998270.0Lycopersicon esculentum GRAS5 (GRAS5) mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246262.30.0nodulation-signaling pathway 2 protein
TrEMBLA0A3Q7I1V40.0A0A3Q7I1V4_SOLLC; Uncharacterized protein
STRINGSolyc09g018460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-20GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]