PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g018150.1.1
Common NameLOC104649110
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 321aa    MW: 35704.4 Da    PI: 9.3417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g018150.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-08111153955
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          r+R  +i   f++Lr l+ + +      K +K++i+ekAv++I++Lq
  Solyc09g018150.1.1 111 ARQRTMKIGIFFNTLRALISNiP-----AKADKSTIVEKAVNHIQKLQ 153
                         699******************88.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.261102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-12105165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.76E-8107157No hitNo description
Gene3DG3DSA:4.10.280.104.9E-10107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-5108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5111153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKKKKINGGG ENNHVFPWET NDGWPYLNLN GNQIGIAVTF EGDKLQDPTR FDTYPPLTVV  60
NEVIEPSTNA GKKRSPPNRK KNGKEIVEPN FCIDGAGDRG GLNHDLHIWM ARQRTMKIGI  120
FFNTLRALIS NIPAKADKST IVEKAVNHIQ KLQNTLEKLE QEKLERLQEH NVRCRSSQKF  180
TNTCNNWEKY LGDQGSTHNT SSTTSTTHGT NPLMVNNNIP TGFVTWSSPN VILNVCGENA  240
HISVCYPKKS GLFTFICYIL GKHGIEIVSA QASSDQFRSV FKIQAHAKGG TGIAQYSEAS  300
RVEEMYKQIA IEIISFATPK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g018150.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326110.10.0transcription factor bHLH95-like
TrEMBLK4CS820.0K4CS82_SOLLC; Uncharacterized protein
STRINGSolyc09g018150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-14bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]