PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g014700.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 175aa    MW: 19893.5 Da    PI: 8.4696
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g014700.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.37.6e-319108199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +CaaCk++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++e+++++l+ eA++r ++PvyG++++ +kl+ q+e++
  Solyc09g014700.1.1   9 KCAACKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDTEKKEKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99 
                         5***********************************************95556699*********************************** PP

              DUF260  91 kaelallke 99 
                          +e++l+k+
  Solyc09g014700.1.1 100 MKEIDLVKK 108
                         ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.6198110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-319107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNDAGARGKC AACKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADT  60
EKKEKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA  120
FCPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENHANQD VEKDRVHFND NDGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1851047105LOB family transfactor Ramosa2.1
5ly0_B1e-1851047105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g014700.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246831.11e-120LOB domain-containing protein 24-like
TrEMBLA0A3Q7HYK93e-73A0A3Q7HYK9_SOLLC; Uncharacterized protein
TrEMBLA0A3Q7I0Y78e-74A0A3Q7I0Y7_SOLLC; Uncharacterized protein
STRINGSolyc09g014700.1.11e-127(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-25LOB domain-containing protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]