PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 381aa MW: 40845.1 Da PI: 5.1726

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g011780.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	67	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + Solyc09g011780.2.1 67 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 112 79****************************.*********985 PP
2	Myb_DNA-binding	58.2	1.9e-18	119	163	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ Solyc09g011780.2.1 119 RKPFTDEEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 163 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.332	62	113	IPR017930	Myb domain
SuperFamily	SSF46689	9.71E-31	64	160	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	66	115	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-17	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-27	68	120	IPR009057	Homeodomain-like
CDD	cd00167	3.02E-14	69	111	No hit	No description
PROSITE profile	PS51294	27.88	114	168	IPR017930	Myb domain
SMART	SM00717	8.9E-18	118	166	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-16	119	163	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	121	167	IPR009057	Homeodomain-like
CDD	cd00167	1.05E-13	121	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MENDTPEVQE VTVAVDGSHG GGIGDASMGG GGGGGGVDGG DEEEVLMLED GSGSSDQVRK 60 KTADRVKGPW SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK 120 PFTDEEDRII LQAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCAE HGKLRSDSSN 180 ILEDASAGKS KASSEETQSC GDVNSLKAIE AKDVSSQENQ EGNHYEDRSQ EVVQQSDVAN 240 DPRTLFRPVA RISAFSVYGS LNVPESQLQT PRLIPTQAPD LGITKLLEGA FTDRLVPHQC 300 GHGCCGNVNQ EINGSSLLGP EFVDYAEPPS FSSHELAALA TEISNVAWYK SGLENSSIEA 360 TFNPTTRAAC GTSHLPSRPF *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MENDTPEVQE VTVAVDGSHG GGIGDASMGG GGGGGGVDGG DEEEVLMLED GSGSSDQVRK  60
KTADRVKGPW SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK  120
PFTDEEDRII LQAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCAE HGKLRSDSSN  180
ILEDASAGKS KASSEETQSC GDVNSLKAIE AKDVSSQENQ EGNHYEDRSQ EVVQQSDVAN  240
DPRTLFRPVA RISAFSVYGS LNVPESQLQT PRLIPTQAPD LGITKLLEGA FTDRLVPHQC  300
GHGCCGNVNQ EINGSSLLGP EFVDYAEPPS FSSHELAALA TEISNVAWYK SGLENSSIEA  360
TFNPTTRAAC GTSHLPSRPF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-41	64	167	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g011780.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246368.1	0.0	transcription factor MYB1
Swissprot	Q42575	5e-94	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A3Q7I0H7	0.0	A0A3Q7I0H7_SOLLC; Uncharacterized protein
STRING	Solyc09g011780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2611	24	54
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-93	myb domain protein 1

Link Out ? help Back to Top
Phytozome	Solyc09g011780.2.1
Entrez Gene	101261736

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]