PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 277aa MW: 31666.2 Da PI: 7.9442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g011120.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Solyc09g011120.1.1 52 YTCSFCRREFRSAQALGGHMNVH 74 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.09E-6	49	79	No hit	No description
SMART	SM00355	0.0061	52	74	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.219	52	79	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEQTRYWMST KRKHDMTLSN NPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE 60 FRSAQALGGH MNVHRRDRAR MKQSPPSNSP SVHDHQVFIP PTPPLHSNHH HNSHVQYPSQ 120 ICNTFMYNPN SDSASGVPIR VSSQKTLETH HHSSLSSIVH EEKKNSLSSS WSNLVADKYS 180 CLSSVKNDEE KKMKSIDFKK DQERNLEVMI DSSFRAKHDH IVEPNYKRRK VDQEDNISFA 240 NLFPRTSSSI ERCRPQSEAL ERIPSAIEEL DLELKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	47	74	2	29	superman protein
2l1o_A	2e-13	47	74	2	29	Transcriptional regulator SUPERMAN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269\|PubMed:12154136}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may regulate cell division and growth. {ECO:0000269\|PubMed:12154136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g011120.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071045.1	0.0	zinc finger protein 10
Swissprot	O80942	2e-26	ZFP10_ARATH; Zinc finger protein 10
TrEMBL	A0A3Q7I017	0.0	A0A3Q7I017_SOLLC; Uncharacterized protein
STRING	Solyc09g011120.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9045	20	26
Representative plant	OGRP576	15	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	2e-27	zinc-finger protein 10

Link Out ? help Back to Top
Phytozome	Solyc09g011120.1.1
Entrez Gene	101261848

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]