PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g010680.2.1

Common Name

LOC101255126

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 399aa MW: 42445.5 Da PI: 9.5238

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g010680.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.4e-38	82	141	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnyslsqPr+fCkaC+ryWt+GGalr vPvGgg+r+nk+s+ Solyc09g010680.2.1 82 ETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRSVPVGGGCRRNKRSN 141 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	65	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MNFSSIPAYL DPANWQQQSG STIQNHHHHQ QQQLTSAPPP PVLPPGPPVV APLQPHGGGG 60 AGSIRPGSMA DRARMANITM PETALKCPRC DSTNTKFCYF NNYSLSQPRH FCKACKRYWT 120 RGGALRSVPV GGGCRRNKRS NNNNKNSTNN NNNNNSSKSP ASSTSTDGRQ GTNNSGSSTT 180 ISSHSNSFSG PTSAASLLGL MSPQIPPLRF MSPLGQFSSD HHHHHHFTPS NHMNLNFSTS 240 SCGNILGGTT EGMMVSNNNL LGTGTGAGVG GHVASLLSSG NLEHWRMQQQ FPNFLGGFDP 300 SNSPSSYPFQ GGVHEAVQYL GGESTSQISR PKISTSMLNQ MASVKMEDNN NNNSNQDQSA 360 LSRQLLGIQG NNENWNTSAS AWSDLSASFS SSSTSNAL*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MNFSSIPAYL DPANWQQQSG STIQNHHHHQ QQQLTSAPPP PVLPPGPPVV APLQPHGGGG  60
AGSIRPGSMA DRARMANITM PETALKCPRC DSTNTKFCYF NNYSLSQPRH FCKACKRYWT  120
RGGALRSVPV GGGCRRNKRS NNNNKNSTNN NNNNNSSKSP ASSTSTDGRQ GTNNSGSSTT  180
ISSHSNSFSG PTSAASLLGL MSPQIPPLRF MSPLGQFSSD HHHHHHFTPS NHMNLNFSTS  240
SCGNILGGTT EGMMVSNNNL LGTGTGAGVG GHVASLLSSG NLEHWRMQQQ FPNFLGGFDP  300
SNSPSSYPFQ GGVHEAVQYL GGESTSQISR PKISTSMLNQ MASVKMEDNN NNNSNQDQSA  360
LSRQLLGIQG NNENWNTSAS AWSDLSASFS SSSTSNAL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24604	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g010680.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246430.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A3Q7HZW1	0.0	A0A3Q7HZW1_SOLLC; Uncharacterized protein
STRING	Solyc09g010680.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Solyc09g010680.2.1
Entrez Gene	101255126

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]