PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 203aa MW: 22078.9 Da PI: 6.2725

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g009240.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.8	6.3e-19	33	84	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++k++g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+ +l+g Solyc09g009240.1.1 33 PVYRGIRRRKSSGKWVSEIREPK----SpNRIWLGTFPTPEMAAIAYDVAAIALKG 84 68*****************93....578********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.1E-12	33	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.102	34	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-19	34	94	IPR016177	DNA-binding domain
SMART	SM00380	4.4E-32	34	98	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-28	34	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.6E-8	35	46	IPR001471	AP2/ERF domain
CDD	cd00018	8.03E-30	35	94	No hit	No description
PRINTS	PR00367	9.6E-8	74	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTTTTYGGKN IIIGGSNNSR TAPNNKSYSG RHPVYRGIRR RKSSGKWVSE IREPKSPNRI 60 WLGTFPTPEM AAIAYDVAAI ALKGPEADLN FPNSAASFPV PATSSARDIQ TAAARAAAAI 120 GAAGDALLAA AAVHREVVIN EKGKLENVEI QNFEFMDEDL IFDMPNVLVN MAEGMLLSPP 180 RFYMHDDDDQ TTITYQNLWN YT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g009240.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888712.1	1e-149	ethylene-responsive transcription factor ERF024-like
Swissprot	Q9SJR0	3e-53	ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBL	A0A3Q7HZ49	1e-147	A0A3Q7HZ49_SOLLC; Uncharacterized protein
STRING	Solyc09g009240.1.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36450.1	1e-44	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc09g009240.1.1
Entrez Gene	101262848

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]