PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g008030.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 202aa    MW: 21246 Da    PI: 8.0766
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g008030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-3543120683
                 TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                         ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++   s
  Solyc09g008030.1.1  43 SSSKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTVPATQVTTTSENIPLS 120
                         579*********************************************************999997774443333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.5E-3144123IPR005333Transcription factor, TCP
PROSITE profilePS5136927.3194599IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGSEIVVSGA ISGVGNGSVN SETNGKTALA VVPTKKKNAL SVSSSKDRHT KVNGRGRRVR  60
MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTVPATQV TTTSENIPLS  120
QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL  180
LLQPVTADDG EEKVAEEDEK Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.257840.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g008030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476040.0Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233821.21e-147TCP transcription factor 19
SwissprotQ9SJK74e-41TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A3Q7HYI71e-145A0A3Q7HYI7_SOLLC; Uncharacterized protein
STRINGSolyc09g008030.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-35TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Parapunova V, et al.
    Identification, cloning and characterization of the tomato TCP transcription factor family.
    BMC Plant Biol., 2014. 14: p. 157
    [PMID:24903607]