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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc09g007810.2.1 |
Common Name | LOC101246373 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 695aa MW: 76222.2 Da PI: 7.0807 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc09g007810.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.3 | 1.4e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF
Solyc09g007810.2.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL- 208
89****************************996555555..89***********************************************. PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+ +++ l+v+++r+
Solyc09g007810.2.1 209 -RAENGDLCVGIRRA 222
.4488999****997 PP
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2 | Auxin_resp | 113 | 2.7e-37 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa+ a+++++Fev+Y+Prast+eF+vk + v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
Solyc09g007810.2.1 287 AANLAASGQPFEVIYYPRASTPEFCVKSSLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPIRWPDSPWRLLQ 370
7899******************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 695 aa
Download sequence Send
to blast |
MITFMDPKEK VKEVEKCLDS QLWHACAGSM VQMPSISSKV FYFPQGHSEH ASGNVDFRSS 60 IRIPSYIPCK VSAIKYMADP ETDEVFAKIR LIPVGRNEVE FDDDGVVGMN GSDNQDKPSS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG 240 GNCMVPYGGF SSFLREDENK LMRNGNGNNG GNLMNKGKVK AESVIEAANL AASGQPFEVI 300 YYPRASTPEF CVKSSLVKSA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVSDPIR 360 WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPPRKK LRLPQHPDFP 420 LDGHLPMPAF SGNHLLGPNS PFGCLPDNTP AGMQGARHAQ YGLSLSDLHF NKLHSSLFPV 480 GFPPLDQAAA APRRPLNSPM ISKPCNNENI SCLLTMGNSA HSTKKSDIGK APQLVLFGQP 540 ILTEQQISLS CSGDTVSTVR TGNSSSDGNA DKIGNVSDGS GSALNQRGLT ERSPCDTFQS 600 DPNTEIGHCK VFMESEDVGR TLDLSLLGSY EELCRKLANM FGIDNSEMLN HVLYRDTTGS 660 VKQLGDEPFS DFMKTARRLT ILTDSSSDNV GIRE*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Huang J,Li Z,Zhao D
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]
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