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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g007260.2.1 | ||||||||
Common Name | LOC101259280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 456aa MW: 49933.6 Da PI: 7.0777 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 142 | 191 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Solyc09g007260.2.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-16 | 142 | 201 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 142 | 191 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.87E-12 | 143 | 201 | No hit | No description |
SMART | SM00380 | 9.6E-32 | 143 | 205 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 143 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-17 | 143 | 200 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-12 | 234 | 279 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-6 | 234 | 279 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-12 | 235 | 283 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MFDLNLCFEE DAMETVTTSG KLKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDQ 60 RTDGYAFEIL RADYEVNGFV TKELFPLTGG ESAATPSQQQ QQWLDLSGNY GGVPMEQRIV 120 IGPPQLRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAAIKFR GLDADINFNV SDYHDDLKQM GNFSKEEFVH ILRRQSTGFS RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKAY DKAAIKCNGK EAVTNFELST YEGELSTEAE NGGADHNLDL 300 NLGIAPSVLA DDQGGNTCQM VNYVVQCASN GLPGYTGAMN IPTTTMGGKL LHGHQLLTDR 360 PLLWNGVNTS IFPTLKGTSL GKGIEVDSLP NWTRQDQHPY GGSPSVPLFS TAASSGFANS 420 TTAAAQLPRF STGKLPYQHS PSLANMNFAH YYCKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g007260.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU180574 | 0.0 | Solanum lycopersicum clone BAC C09HBa0179M08, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246701.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | Q9SK03 | 3e-92 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A3Q7HXZ3 | 0.0 | A0A3Q7HXZ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g007260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 6e-94 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g007260.2.1 |
Entrez Gene | 101259280 |
Publications ? help Back to Top | |||
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