PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g005560.2.1 | ||||||||
Common Name | LOC101249201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 34425.9 Da PI: 7.6943 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.6 | 2.3e-25 | 45 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+e+g++rsp+qCk+kw+nl +ryk +++ e + ++++p++++l+ Solyc09g005560.2.1 45 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKEKGYNRSPEQCKCKWKNLVTRYKGCETVEPEA--L-RQQFPFYNELQ 127 7********************************************************************95..3.4589*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.02E-23 | 44 | 109 | No hit | No description |
Pfam | PF13837 | 7.8E-21 | 45 | 129 | No hit | No description |
PROSITE profile | PS50090 | 7.445 | 46 | 102 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDPHLHHHQH HLQQQQHQFS HQSVNIDTTS GGVNIGGGGG DRFPQWSIQE TRDFLMIRAE 60 LDQTFMETKR NKLLWEVIAT KMKEKGYNRS PEQCKCKWKN LVTRYKGCET VEPEALRQQF 120 PFYNELQAIF GARMQRMLWI EAEGGVGGGA SGSKKKAISS DEEEENDDSD GEKVGKKKRK 180 VKGSMMVGSS SGNNNNNNLV SSLKEILDDF MKQQMVMEMQ WLKAYEAKEE ERRIKEMEWR 240 QTMEALENER LMMETRWRER EEQRRMREEA RAEKRDALIT TLLNKLRRED HNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 3e-13 | 42 | 106 | 3 | 67 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 180 | KKKRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g005560.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246753.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 9e-69 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A3Q7HXM5 | 1e-172 | A0A3Q7HXM5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g005560.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 | Representative plant | OGRP2262 | 15 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 9e-53 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g005560.2.1 |
Entrez Gene | 101249201 |
Publications ? help Back to Top | |||
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