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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g083230.1.1 |
Common Name | LOC101249846 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRF |
Protein Properties |
Length: 399aa MW: 43707.7 Da PI: 7.8292 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g083230.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 75.1 | 7.5e-24 | 124 | 167 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
Solyc08g083230.1.1 124 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 167
79***************************************987 PP
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2 | QLQ | 37.2 | 9.2e-14 | 74 | 108 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
+FTa+Qlq++ +Q + Ky++a++PvPp+Ll++++
Solyc08g083230.1.1 74 PFTASQLQEFQRQFIICKYIMASMPVPPHLLLPLP 108
9*******************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MEKGENTELL DLKMKTSEVS YPNKRTMFMA PSSHPYFLKE TADDGGSGGS GPEKYVGSDV 60 VSSGASNTCA RKVPFTASQL QEFQRQFIIC KYIMASMPVP PHLLLPLPSP PQSNMDLKFS 120 SGSDPEPWRC KRTDGKKWRC SRDVAPDQKY CERHAHKSKP RSRKPVEIHT NPSPKSNNRH 180 SFQFPTVQPS NDQTRCIEWL GRGDTCGTIP VDDNCNKQLM QSIGFNTRNS PAFQVQHEPK 240 LYPMNFNQYM CNSSSDQALA SQLKNEHCNN SIIASLQGRG TTSNAWPKDG ISSNGSFTSL 300 TLSMSGWNGG MDDDNKHAQA GIRMLDSERS GDEVLRSQWL NPVSWMSSTA PGGPLGEALC 360 LGNASSLRSP HGYSNSSATS SCSFDSCENG SHGLDFIG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009261 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence |
GenBank | AP009280 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence |