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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g082750.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 1612aa MW: 180949 Da PI: 6.5764 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.7 | 5.6e-29 | 578 | 629 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Solyc08g082750.2.1 578 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 629 589***********************************************97 PP | |||||||
2 | RWP-RK | 54.5 | 2.2e-17 | 1438 | 1485 | 3 | 50 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++++ +dl+++F++++ dAAk+L+++ ++LKr CR+yGI+RWP k k Solyc08g082750.2.1 1438 DSVNYDDLKQHFDKNLSDAAKSLQISRSTLKRLCRKYGIRRWPLSKRK 1485 678899*************************************86654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.655 | 566 | 649 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.9E-26 | 581 | 629 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.18E-22 | 882 | 969 | No hit | No description |
SMART | SM00666 | 1.8E-22 | 883 | 965 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 23.655 | 883 | 965 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.9E-25 | 883 | 964 | No hit | No description |
CDD | cd06407 | 6.89E-36 | 884 | 964 | No hit | No description |
Pfam | PF00564 | 1.2E-17 | 884 | 964 | IPR000270 | PB1 domain |
PROSITE profile | PS51519 | 14.618 | 1424 | 1509 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.9E-17 | 1440 | 1486 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-6 | 1449 | 1476 | IPR009057 | Homeodomain-like |
SuperFamily | SSF54277 | 4.21E-17 | 1517 | 1602 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-16 | 1519 | 1602 | No hit | No description |
SMART | SM00666 | 1.0E-11 | 1521 | 1603 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 18.625 | 1521 | 1603 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.4E-13 | 1522 | 1601 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1612 aa Download sequence Send to blast |
MSEPEEEMNF IFRSKPKDFV HPPPATAAAI FAAAASASNP MSPFLVSAAS EQPCSPLWAF 60 SDENEDKPNG NALSTGSLRL SNYPRFVTYA NEHEAAPETV SVTDDKKRIP PPIKGLAPLD 120 YLDSSCIIKE RMTQALRYFK ESTGERVLAQ VWAPVKNGGR YVLTTSGQPF VLDPDCNGLH 180 QYRMVSLMYM FSVDGETDGV LGLPGRVYRK KLPEWTPNVQ YYSSKEFPRL NHALDYNVRG 240 TLALPVFEPS GQSCVGVLEL IMTSQKINYA PEVDKVCKAL EAVNLKSSEI LDYPNHQICN 300 EGRQNALVEI LEILTAVCET YKLPLAQTWV PCRHRSVLAD GGGFKKSCSS FDGSCMGQVC 360 MSTTDVAFYV VDAHMWGFRE ACAEHHLQKG QGVAGRAYAS QKSCFCEDIG KFCKTEYPLV 420 HYARLFGLSR CFAICLRSTH TGNDDYILEF FLPPNDGDYT DQLALLNSLL LTMKQHFRSL 480 RVASGEELEH DWGSVEIIKA STEEKLGSRF DSVPTTKSLP QSASVANGRR HPDLMEEQHS 540 TVAKGAEGVN VTAEAHNHAS VPQNKQTGKK SERKRGKAEK TISLEVLQQY FAGSLKDAAK 600 SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI ESVQGADGTF SLTSLAPNSL 660 PVAVGSISWP AGINGSPCKA SEYQEEKNEF SNHGTPGSHE EAEPTDQMLG SRIIGNEELS 720 PKLNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPSP ANESSPQNEL LNSPTQESVM 780 KVEGSLEPAR QTTGELNLST AFLMPGLFIP EHTHQQFRGM LVEDAGSSHD LRNLCPAGET 840 MFDERVPEYS WTNPPCSNGI ATNQVPLPVE KMPQFSSRPE VTSVTIKATY REDIIRFRLC 900 LNSGIYKLKE EVSKRLKLEM GTFDIKYLDD DHEWVLIACD ADLQECIDIS SSSGSNVVRL 960 LVHDIMPNLG SSCESSGVKE KIKLALQRIE TSQVILLQFW GLENIEGRKF LSTSGQPFGL 1020 RYLYKGLCWY RKHCQGYKYS VDKGENHEQG MEKTHLFGPP TRVFQQKLPE SSTHVGYYTN 1080 EEFPMRDHVL QCGVRTYLAL PVFEPVDKNC IGVIELVTVW KGGYLTCEVE RVLNPLEAVD 1140 LKCPKIFLNK DRKVQAEKYN EGEEFKRMLK IVRETHKLPF IRVWIPCVNL EMDHNGMYVG 1200 CTELAMSASN EVYFVADEEM DANDHVYDDY YYDDMLCFRD ISKLQPLQKD QGVVGKAFSS 1260 GKLCYCTNIT EFSIIEYPLV HYARWCGLTT SFAICLKSRD DAYILELFLP PDNGDPNMLL 1320 GSILTTMGQH FQNFKFASGQ ELGNDSSVQV VKASSDKNVD YFHIYQTRDS SFMPEVLHVE 1380 DSRNQLMEGN ENHMEKKEDR KQSMVQSNVL SIDSHVISEK QCVSVSHLQK ESRTRTKDSV 1440 NYDDLKQHFD KNLSDAAKSL QISRSTLKRL CRKYGIRRWP LSKRKKSSES DQQTLTKVSK 1500 KNKSIGSETT TQKDHESCSS SFTVKATFGD DMMKFKLYTF SRKDDLDNEV SKRLKLPIGR 1560 FRINYMDEDN DWIWIACDDD LSDCFNNAQS LGNNTIKMLV LPAAINHHFE L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22558 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g082750.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009397 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, complete sequence, clone: C08SLm0010D08 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245486.1 | 0.0 | protein NLP7-like | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A3Q7HUP0 | 0.0 | A0A3Q7HUP0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g082750.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5223 | 22 | 39 |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g082750.2.1 |