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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g082630.2.1 |
Common Name | ARF9 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 645aa MW: 72370.5 Da PI: 7.9763 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g082630.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 71.2 | 1.4e-22 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+kvlt sd++++g +++ +k+a+e+ ++++ +++l+ +d++ +W++k+i+r++++r++lt+GW+ Fv++++L +gD++vF
Solyc08g082630.2.1 116 FCKVLTASDTSTHGGFSVLRKHANEClppldlNQQT-PTQELIAKDLHDVEWRFKHIFRGQPRRHLLTTGWSTFVSSKKLVAGDSFVFL-- 203
99****************************973333.3459************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ ++++l+v+v r
Solyc08g082630.2.1 204 RGNNGQLRVGVKR 216
3478888999865 PP
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2 | Auxin_resp | 96.2 | 5e-32 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t+++F v+Y+Pr+ ++F+v v+k+++alk++++vGmRfkm+fe e + rr++Gt+vg+ dl++ +W+nS WrsLk
Solyc08g082630.2.1 242 ASHAVTTQTMFVVYYKPRT--TQFIVGVNKYLEALKHEYAVGMRFKMQFEAEGNPDRRFMGTIVGIDDLSS-QWKNSAWRSLK 321
789***************6..9**********************************************777.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 645 aa
Download sequence Send
to blast |
MNSPGKKDAL YHELWQLCAG PVVDVPREGE RVYYFPQGHM EQLVASINQE MDQRVPSFNL 60 KSKVLCRVIN SHFLAEEDND EVYVQITLMP EAPHVPEPTT PDPLIPQDVK PRFHSFCKVL 120 TASDTSTHGG FSVLRKHANE CLPPLDLNQQ TPTQELIAKD LHDVEWRFKH IFRGQPRRHL 180 LTTGWSTFVS SKKLVAGDSF VFLRGNNGQL RVGVKRLVRQ QSSMPSSVMS SQSMHLGVLA 240 TASHAVTTQT MFVVYYKPRT TQFIVGVNKY LEALKHEYAV GMRFKMQFEA EGNPDRRFMG 300 TIVGIDDLSS QWKNSAWRSL KVRWDEPAAI ARPDRVSPWE IKPYVCSIPN VLVPPTAEKN 360 KRHRLHSEIK ISEQPSSSNA SAVWNPSLRS PQFNTFGINS STNCALASLT ESGWQLPHLN 420 TSGMLVDEPE DGRSAPTWCG FPCVLAPQFG QGTNQPIVIP TDGRKCDTKK TCRLFGIDLK 480 SSSISTTEAR LQLQPAGISC VFAERAPPNT VPAGDSDQKS ELSVDFKDQM QGHLRLPLKE 540 VQSKQSCSTR SRTKVQMQGV AVGRAVDLTI LKGYDELTKE LEEMFEIQGE LQSRQKWGIL 600 FTDDEGDTML MGDYPWQDFC NVVRKIFICS SQDMKKLTLS RADS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 1e-164 | 8 | 343 | 17 | 354 | Auxin response factor 1 |
4ldw_A | 1e-164 | 8 | 343 | 17 | 354 | Auxin response factor 1 |
4ldw_B | 1e-164 | 8 | 343 | 17 | 354 | Auxin response factor 1 |
4ldx_A | 1e-164 | 8 | 343 | 17 | 354 | Auxin response factor 1 |
4ldx_B | 1e-164 | 8 | 343 | 17 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Function -- GeneRIF ? help
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- ARF9 negatively controls cell division during early fruit development in tomato.
[PMID: 25883382]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013639 | 0.0 | Lycopersicon esculentum clone 132441R, mRNA sequence |
GenBank | HM037250 | 0.0 | Solanum lycopersicum cultivar Zhongshu No. 6 auxin response factor 9 (ARF9) mRNA, complete cds |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Wu J, et al.
Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Plant Cell Rep., 2011. 30(11): p. 2059-73 [PMID:21735233] - de Jong M, et al.
Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development. J. Exp. Bot., 2015. 66(11): p. 3405-16 [PMID:25883382]
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