PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g081670.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 342aa    MW: 38351 Da    PI: 8.3592
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g081670.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.5e-083780552
                 AP2  5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52
                        G+r+ k +gr +A I d       r k+++lg+f+t eeA +a+   + +
  Solyc08g081670.1.1 37 GIRRQK-NGRCAAVITDrI-----RhKKVWLGTFDTVEEASQAYFSKKSE 80
                        999877.8******99922.....35*****************9776655 PP
2AP229.42e-09214257754
                 AP2   7 rwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         r + k+gr++A I d +     + kr++lg+f+t eeA +a+   + ++e
  Solyc08g081670.1.1 214 R-RQKNGRYEAVITDpF-----ThKRVRLGTFDTVEEASQAYFYKKSEFE 257
                         3.5669*********55.....46******************87776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.8373493IPR001471AP2/ERF domain
PfamPF008471.1E-43679IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-103683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-93777IPR001471AP2/ERF domain
SMARTSM003800.00473788IPR001471AP2/ERF domain
CDDcd000184.97E-113774No hitNo description
PROSITE profilePS5103211.245209266IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9211256IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-8212249IPR001471AP2/ERF domain
SMARTSM003800.0062212263IPR001471AP2/ERF domain
CDDcd000181.28E-11212249No hitNo description
PfamPF008472.9E-4214258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDSKKLVVNV NQGETLEYDE CNISKNCKTK ANVSLIGIRR QKNGRCAAVI TDRIRHKKVW  60
LGTFDTVEEA SQAYFSKKSE FQNEKLRNQG NKKSERKRET RSIVEVYKRG KYYSEKSDVK  120
QGNENVNGEV CHMESTWESE IDVVILSSFN GGTEQRIDSH EIGSVEEVFR IAKEGCRVFN  180
LGLMANVCGT KSSDDCNNTT SCNPKVKVSL IGARRQKNGR YEAVITDPFT HKRVRLGTFD  240
TVEEASQAYF YKKSEFEKLS HQGNQQNILK KNCDHIQQLE SSFVVASLDT VASESGISKR  300
IDSQGEEPKS SKATSCVESS DECCITTSCD PKTRISITGI R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.127720.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g081670.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLA0A3Q7HUI30.0A0A3Q7HUI3_SOLLC; Uncharacterized protein
STRINGSolyc08g081670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-11ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]