PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g081650.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 909aa MW: 102470 Da PI: 7.3159 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.1 | 5.8e-10 | 125 | 165 | 5 | 49 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 GVr+ k +gr+ A I d + ++k+++lg+f+t eeA +a+ Solyc08g081650.1.1 125 GVRRQK-NGRYGAVITD----QiRHKQVWLGTFDTVEEASQAYFSK 165 9**888.8*********....4345*****************9765 PP | |||||||
2 | AP2 | 32.5 | 2.2e-10 | 281 | 328 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 GVr k +gr+ A I d + k+k+++lg+f+t eeA +a+ + +le+e Solyc08g081650.1.1 281 GVRKQK-NGRYGAVITDTT---KHKQVWLGTFDTVEEASQAYFSKKSELENE 328 9**888.8*********42...35******************9999999886 PP | |||||||
3 | AP2 | 30.9 | 6.6e-10 | 436 | 482 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 GVr+ k +gr+ A I d r k+++lg+f+t +eA +a+ + +le+ Solyc08g081650.1.1 436 GVRRQK-NGRYGAVITDtT-----RhKQVWLGTFDTVDEASQAYFSKKSELEN 482 9**888.8*********33.....35******************999988886 PP | |||||||
4 | AP2 | 31.6 | 4.1e-10 | 587 | 632 | 5 | 54 |
AP2 5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 G+r+ k +gr+ A I d k+kr++lg+f+t eeA +a+ + +le Solyc08g081650.1.1 587 GIRRQK-KGRYGAVITD----RiKHKRVWLGTFDTVEEASQAYFSKKSELE 632 999888.7*********....4446******************88777776 PP | |||||||
5 | AP2 | 31.2 | 5.6e-10 | 694 | 736 | 6 | 51 |
AP2 6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 V+ +k +g++ +eIr p ++ kr++lg+fgtae+A +a+ ++ Solyc08g081650.1.1 694 VHKRKDSGKYTSEIRNP----ISkKRIWLGTFGTAEDAFQAYQSKKL 736 8899************7....246*****************976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.693 | 122 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-5 | 124 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-9 | 124 | 165 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-11 | 125 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-10 | 125 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-4 | 125 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.588 | 278 | 340 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-5 | 278 | 339 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-9 | 280 | 325 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-5 | 281 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-10 | 281 | 325 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.37E-12 | 281 | 318 | No hit | No description |
PROSITE profile | PS51032 | 11.337 | 433 | 492 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-9 | 434 | 480 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-5 | 435 | 482 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.13E-11 | 436 | 473 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-9 | 436 | 478 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-4 | 436 | 490 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.838 | 584 | 641 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-6 | 586 | 632 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-9 | 586 | 630 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-10 | 587 | 624 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.50E-12 | 587 | 624 | No hit | No description |
SMART | SM00380 | 1.4E-4 | 587 | 643 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.327 | 690 | 752 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 691 | 745 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-10 | 694 | 731 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-9 | 694 | 738 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-12 | 694 | 738 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
METDEEGLLA EEEEGKSSNK KQKMTQIEQP EIFVDKVKSV IPLQNTNHKA QSNKQETDGK 60 MPLFVNEWQM REKGAFLGTD EEFKGFSFNM HKFQEKEPFM HKSCLMSNVH GDTESSNKAK 120 VSLIGVRRQK NGRYGAVITD QIRHKQVWLG TFDTVEEASQ AYFSKKSEFE ILRQQGNKDN 180 KPKENSDQIQ LPESPVVLSS MSVASDQTLD SASVGCRNRR IDSHETTPHI VEVHKSKMSG 240 EVPESSKETQ CLVASVVQNT ESYDECNTST SNLKAKISLL GVRKQKNGRY GAVITDTTKH 300 KQVWLGTFDT VEEASQAYFS KKSELENEKL NQQHNKENRP KKNYGQIQQP ESPVVHASLS 360 VEGVQTLDTA SVGMRIERID FHGTTHVVEV RKSKTSEKEP EFSKDASCLM GSVHATESSD 420 QCNTSTGNPK AKNLIGVRRQ KNGRYGAVIT DTTRHKQVWL GTFDTVDEAS QAYFSKKSEL 480 ENQKLNQQGN KETRDQIQQP ESLVAYLSIN NDQTLNAASG GRRNKRIDSH KATPDIVGVH 540 NNKTSEKELE SSRETTHLMD NVHGTESCDE CNTTTSCDPK AKISLIGIRR QKKGRYGAVI 600 TDRIKHKRVW LGTFDTVEEA SQAYFSKKSE LERLGQQGNQ ENKLKDCDQV QQPESPVLPS 660 VSVANHDQTL NTSRVRRRNE KIDSHKTRTR FFRVHKRKDS GKYTSEIRNP ISKKRIWLGT 720 FGTAEDAFQA YQSKKLEFDR LVHAKRQRGN EQTHSTQDEK LEKLVNAESR HVNVNRELES 780 AGGSDINVPI SNSSNGGNEE RIDSHEISTA EEAFHAYQSK KLDLQSSKKA ELQSYMPTDS 840 SAGEKQEGQE DDENLWKGEW MQLPGDNKAV KFSLKLGLPI IDNYGSLLGE FSTLDDLSLC 900 KTDYDNET* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g081650.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016566296.1 | 0.0 | PREDICTED: uncharacterized protein LOC107864446 | ||||
TrEMBL | A0A3Q7HWF6 | 0.0 | A0A3Q7HWF6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g081650.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 6e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g081650.1.1 |
Publications ? help Back to Top | |||
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