PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g081500.1.1
Common NameTHM1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 332aa    MW: 37825.9 Da    PI: 6.3669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g081500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Solyc08g081500.1.1 14 RGLWSPEEDEKLIRYITSHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding53.46e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Solyc08g081500.1.1  67 RGRFTPEEEKLIISLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                         89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.638961IPR017930Myb domain
SuperFamilySSF466896.24E-3011108IPR009057Homeodomain-like
SMARTSM007173.8E-121363IPR001005SANT/Myb domain
PfamPF002493.9E-151461IPR001005SANT/Myb domain
CDDcd001671.39E-111761No hitNo description
PROSITE profilePS5129425.29662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565117IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
CDDcd001673.60E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKLKKTS  120
KSSTNTTSIT DHHHHQHQNQ RPQLTNYNTI TSQQDIFFTQ DIGTKSQVLL QDSTLFNSPN  180
QLFFFDGGSL DSMTNVLIND ATNRNATNNT SLFQETSILN SEFCWQVDQQ QVQTSSYAIG  240
MNSNYLPPLI ESMVPPMEIP SSNNNNNIIL EGQENNNELN EWNSQVDTQQ CCPSYLFWDQ  300
ENGSIGGDHE IIDPTTSNNM GQILSSFPST L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g081500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX952970.0L.esculentum mRNA for THM1 protein
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234555.10.0hypocotyl Myb protein THM1
TrEMBLQ435240.0Q43524_SOLLC; Transcription factor
STRINGSolyc08g081500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-76myb domain protein 103
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Lin Q,Hamilton WD,Merryweather A
    Cloning and initial characterization of 14 myb-related cDNAs from tomato (Lycopersicon esculentum cv. Ailsa Craig).
    Plant Mol. Biol., 1996. 30(5): p. 1009-20
    [PMID:8639738]