PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g080580.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 482aa    MW: 54348.1 Da    PI: 7.9677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g080580.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-1857100448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT+eEd ll ++v+++ g++Wk+Ia++++ gRt+ qc +rwqk+l
  Solyc08g080580.2.1  57 WTEEEDNLLTEVVERFKGRNWKRIAECLN-GRTDVQCLHRWQKVL 100
                         *****************************.************986 PP
2Myb_DNA-binding62.96.4e-20106152148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+l++++v+++G + W++Ia+ ++ gR +kqc++rw+++l
  Solyc08g080580.2.1 106 KGPWTKEEDDLIIELVEKHGCKKWSSIANSLP-GRIGKQCRERWHNHL 152
                         79******************************.*************97 PP
3Myb_DNA-binding52.79.7e-17158202147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +++WT++E+  l ++++++G++ W++Ia+ ++ gRt++ +k++w++ 
  Solyc08g080580.2.1 158 KDAWTEQEEMVLCHYHQLYGNK-WAKIAKFLP-GRTDNAIKNHWNST 202
                         679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.93847100IPR017930Myb domain
SMARTSM007173.0E-1453102IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-1556110IPR009057Homeodomain-like
PfamPF002491.1E-1557100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2357112IPR009057Homeodomain-like
CDDcd001672.75E-1357100No hitNo description
PROSITE profilePS5129431.612101156IPR017930Myb domain
SuperFamilySSF466898.61E-33103199IPR009057Homeodomain-like
SMARTSM007172.1E-17105154IPR001005SANT/Myb domain
PfamPF002492.6E-19106152IPR001005SANT/Myb domain
CDDcd001677.85E-16108152No hitNo description
Gene3DG3DSA:1.10.10.606.7E-28113159IPR009057Homeodomain-like
PROSITE profilePS5129420.628157207IPR017930Myb domain
SMARTSM007171.4E-15157205IPR001005SANT/Myb domain
PfamPF002494.1E-15158202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-23160207IPR009057Homeodomain-like
CDDcd001675.98E-11160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVQVKEEAPT LDIGGFISCS SLSDSSYEAS TPRCSSEPGS SCRRSSGPTK RSSQAGWTEE  60
EDNLLTEVVE RFKGRNWKRI AECLNGRTDV QCLHRWQKVL NPELVKGPWT KEEDDLIIEL  120
VEKHGCKKWS SIANSLPGRI GKQCRERWHN HLDPTITKDA WTEQEEMVLC HYHQLYGNKW  180
AKIAKFLPGR TDNAIKNHWN STLKKRLNLN LLSRLVPDIK SEGSPDFSTH KKNMEIKKHP  240
TQAHNAETVF LSEQTGVGNA ADACPTDLRI GSANSPQNGL HKGTSSLGTC KSSEQKERDL  300
IKQFGGIQFV KAEILPIGET DKQCQSTLSL TKISYPLLDS SLDARLDPSH NTGWSSSQVE  360
AVRPTSFGSM YESPKRSRYD AANDPDHDFL SLSLAAFTEV SYGNKKNRTY DTQYSLALNQ  420
PGRLCYEPPK VKDLMISSMD EKLSKDNFIG ICVKELRNEL HKNSFNHKEE EFKNCRSFWS  480
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-65572079159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-65572079159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ESPKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g080580.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092850.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0235H18, complete sequence
GenBankAP0096010.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0023D06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245633.10.0transcription factor MYB3R-4-like
RefseqXP_010325422.10.0transcription factor MYB3R-4-like
TrEMBLA0A3Q7HVU00.0A0A3Q7HVU0_SOLLC; Uncharacterized protein
STRINGSolyc08g080580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.16e-77Homeodomain-like protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]