PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g080540.2.1
Common NameLOC101267632
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 326aa    MW: 35289.3 Da    PI: 4.7321
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g080540.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-35251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k 
  Solyc08g080540.2.1  25 FLTKTYQLVDDPAMDELISWNEDGTTFIVWKPAEFARDLLPKCFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKG 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Solyc08g080540.2.1 107 LLRDIQRRKI 116
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.0E-4183209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVPSSVDCTG ESATGENQRS LPTPFLTKTY QLVDDPAMDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKCFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGEKGLLRD IQRRKISPAG  120
AAVVAPAVVT VNAAQAVTVA VAPAVRVVSS SNSGDEQAFS SNSSGAAAGA AMLRTTTCTT  180
TPELIEENER LRKENAQLNQ ELNRLRSLCS NVYNLMSNYT ANPADIPAGI LGGRALELLR  240
TGQVDGGGAA ITAAESSGFK ADEDMSPRLF GVSIGVKRVR RSSEEESEDQ DQVQPHGSDM  300
KSEPLDSGSA QHDDQPWIDR LDLGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-262511429129Heat shock factor protein 1
5d5v_B8e-262511429129Heat shock factor protein 1
5d5v_D8e-262511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g080540.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092850.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0235H18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245637.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-102HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A3Q7HTF60.0A0A3Q7HTF6_SOLLC; Uncharacterized protein
STRINGSolyc08g080540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.16e-90HSF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]